PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006193-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 235aa    MW: 25789.4 Da    PI: 10.1713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006193-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.46.9e-154491254
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   +++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++v+++k+L
  NNU_006193-RA 44 CKSHSEAERRRRQRINGHLATLRTLLPNT-----TKTDKASLLAEVVQHVKEL 91
                   789*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.4444291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-124491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.22E-134594No hitNo description
Gene3DG3DSA:4.10.280.104.6E-144693IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-144695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-134897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.956138220IPR002912ACT domain
CDDcd048732.91E-9140208No hitNo description
Gene3DG3DSA:3.30.70.2601.9E-7140206No hitNo description
SuperFamilySSF550217.42E-7140209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MLPFPSYYGF GNCSSRDGFP STMEMMEGGG SRSSMAEAKV IAACKSHSEA ERRRRQRING  60
HLATLRTLLP NTTKTDKASL LAEVVQHVKE LKKLAAGVAS HDGDGYNSNS NRSREWAFPG  120
ETDELTLGYC DAESKMIKAS LCCDDRPDLL SDLTKALRSA RGRIRKAEMA TVGGRTKSVL  180
VIQRRNEGSS TGGDEDLEML RRALKAVLDK PILPASGRML PGNKRPRLFS PAHRH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254503.11e-174PREDICTED: transcription factor bHLH30-like
RefseqXP_010254504.11e-174PREDICTED: transcription factor bHLH30-like
RefseqXP_010254505.11e-174PREDICTED: transcription factor bHLH30-like
TrEMBLA0A068U1R89e-73A0A068U1R8_COFCA; Uncharacterized protein
STRINGVIT_18s0001g07410.t019e-69(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-41bHLH family protein